Tools

Reference

ABS filter

R package to identify and remove low-complexity sites in allele-specific analysis of ChIP-seq data

Genomics Bioinformatics

Prof. Deplancke Group

Tutorial Reference

ASAP Automated Single-cell Analysis Pipeline

Genomics RNA-Seq Single-cell

SV - Computer Services | Prof. Deplancke Group

Code Tutorial Reference

ChIP-Seq On-line Analysis Tools

Set of useful tools performing common ChIP-seq data analysis tasks, including positional correlation analysis, peak detection, and genome partitioning.

ChIP-Seq Data analysis Data integration Genomics Data visualization

Bucher Group

Reference

FlyGut

An atlas of the Drosophila adult midgut

Genomics

SV - Computer Services

Tutorial

Genocrunch

Data mining pipeline for metagenomics and metataxonomics

Metagenomics Data analysis Genomics Data visualization

SV - Computer Services | Prof. Harris Group

Reference

GetPrime

Gene and Transcript-specific primer database for real-time PCR

Genomics

SV - Computer Services | Prof. Deplancke Group

Code Tutorial Reference

HTSstation & bbcflib

Analysis pipelines for High Throughput Sequencing data. Available pipelines are ChIP-seq, RNA-seq, 4C-seq, SNP and microbiome.

Metagenomics ChIP-Seq Data analysis Genomics RNA-Seq 4C-seq

SV - Computer Services

Reference

Mycobrowser

Genomics oriented database on Mycobacterium species

Data integration Genome annotation Genomics Bioinformatics

SV - Computer Services | Prof. Cole Group

Reference

PRINSES

Primer-initiated de novo sequence synthesis

Genomics Bioinformatics

Prof. Deplancke Group

Code Tutorial Reference

SNP2TFBS Mapping SNPs to TFBSs

A database of regulatory SNPs affecting predicted transcription facor binding site affinity.

GWAS Genomics

Bucher Group

Reference

SwissPalm Protein S-Palmitoylation database

Lipidomics

Prof. van der Goot Group | SV - Computer Services

Tindex Match sequencing library indexes

A tool to check compatibility of barcodes among differents libraries.

Gene Expression Core Facility